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Survival-associated eQTLs across different cancer types


We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "STAD"
e.g., "rs1824937"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
LGG rs4067976 chr10:89916058 G/GCAGCAT 7.22E-5 405 14.78 18.47 5.52 KM Plot
LGG rs412201 chr5:155987002 C/G 5.09E-6 406 15.33 15.23 15.37 KM Plot
LGG rs41271263 chr6:36020159 C/G 0.000194 399 15.6 14.12 5.3 KM Plot
LGG rs41289315 chr10:17165545 G/A 8.17E-5 403 15.78 11.57 5.93 KM Plot
LGG rs4140876 chr14:74603813 G/A 1.21E-7 402 6.83 19.77 15.13 KM Plot
LGG rs41411846 chr2:202046265 T/C 1.73E-6 407 15.25 15.57 4.45 KM Plot
LGG rs41423646 chr5:133537058 A/C 0.000157 407 15.35 13.75 8.93 KM Plot
LGG rs41461650 chr10:72242658 C/T 0.000106 407 15.2 17.6 8.52 KM Plot
LGG rs41465547 chr2:202048853 AC/A 1.81E-6 406 15.2 15.57 4.45 KM Plot
LGG rs4148845 chr7:150734967 C/T 0.000161 403 15.32 12.57 8.97 KM Plot
LGG rs41524446 chr10:1789247 C/T 3.14E-6 407 11 12.17 15.6 KM Plot
LGG rs415347 chr20:12990482 A/T 5.8E-5 407 15.18 15.55 17.07 KM Plot
LGG rs422664 chr5:156031860 A/C 1.84E-5 407 15.6 15.17 11.63 KM Plot
LGG rs4245924 chr4:108946378 T/C 3.5E-5 406 4.35 15.03 15.6 KM Plot
LGG rs4274691 chr3:38867396 G/A 2.04E-5 402 15.02 16.47 11.63 KM Plot